STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4411Uncharacterized protein probably involved in high-affinity Fe2+ transport. (206 aa)    
Predicted Functional Partners:
amb4413
Polyferredoxin.
 
  
 0.938
amb0937
High-affinity Fe2+/Pb2+ permease.
 
  
 0.903
amb1681
High-affinity Fe2+/Pb2+ permease.
 
  
 0.880
amb0938
Polyferredoxin.
 
  
 0.841
amb4412
Hypothetical protein.
 
     0.825
amb1059
Polyferredoxin.
 
  
 0.804
amb0936
Hypothetical protein.
  
  
 0.601
pgi
Glucose-6-phosphate isomerase.
       0.510
amb0783
Putative heme iron utilization protein.
   
    0.489
amb0846
Outer membrane receptor protein; Mostly Fe transport.
  
    0.453
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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