Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4450Hypothetical protein. (350 aa)    
Predicted Functional Partners:
amb4448
Putative aminotransferase MJ0959.
       0.773
amb0319
Hypothetical protein.
  
     0.681
amb4449
Uncharacterized protein involved in cation transport; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
       0.608
amb0104
Lipid A core - O-antigen ligase and related enzyme.
  
     0.554
amb3502
Chemotaxis protein.
  
     0.514
amb2682
Hypothetical protein.
  
     0.512
amb3934
Uncharacterized protein conserved in bacteria.
  
     0.495
amb3515
Hypothetical protein.
  
     0.478
amb0836
Hypothetical protein.
  
     0.461
amb2371
Predicted phosphatase.
  
     0.452
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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