STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4501ABC-type branched-chain amino acid transport systems, periplasmic component. (456 aa)    
Predicted Functional Partners:
amb1477
Branched-chain amino acid ABC-type transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.779
rsmI
Predicted methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
   0.700
amb0421
Inactivated superfamily I helicase.
  
     0.676
amb4503
Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
       0.657
amb4504
Predicted periplasmic or secreted lipoprotein.
 
     0.605
amb4505
Uncharacterized conserved protein.
       0.550
amb0543
Uncharacterized protein; Conserved in bacteria.
  
     0.547
amb1672
ABC-type branched-chain amino acid transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.530
amb1804
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.525
amb0959
Uncharacterized membrane-bound protein.
  
     0.524
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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