STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4503Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. (129 aa)    
Predicted Functional Partners:
rsmI
Predicted methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.837
amb4504
Predicted periplasmic or secreted lipoprotein.
     
 0.725
amb4505
Uncharacterized conserved protein.
       0.713
amb4501
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.672
gshB
Glutathione synthase/Ribosomal protein S6 modification enzyme; Belongs to the prokaryotic GSH synthase family.
       0.661
amb0681
Predicted Rossmann fold nucleotide-binding protein; Involved in DNA uptake.
 
    0.520
amb3051
Transcriptional regulator.
  
    0.476
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
    0.423
amb0414
Predicted acyltransferase.
 
    0.417
amb1110
Signal transduction histidine kinase.
  
    0.415
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.