Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
amb4503Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family. (129 aa)    
Predicted Functional Partners:
rsmI
Predicted methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.830
amb4504
Predicted periplasmic or secreted lipoprotein.
       0.700
amb4505
Uncharacterized conserved protein.
       0.700
amb4501
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.657
gshB
Glutathione synthase/Ribosomal protein S6 modification enzyme; Belongs to the prokaryotic GSH synthase family.
       0.646
amb0681
Predicted Rossmann fold nucleotide-binding protein; Involved in DNA uptake.
 
  
 0.562
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
    0.461
amb3051
Transcriptional regulator.
  
    0.456
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
  
    0.450
amb1110
Signal transduction histidine kinase.
  
    0.442
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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