Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4505Uncharacterized conserved protein. (282 aa)    
Predicted Functional Partners:
amb4504
Predicted periplasmic or secreted lipoprotein.
      0.889
gshB
Glutathione synthase/Ribosomal protein S6 modification enzyme; Belongs to the prokaryotic GSH synthase family.
 
     0.798
rsmI
Predicted methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.700
amb4503
Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
       0.700
amb4501
ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.550
amb4252
Uncharacterized protein conserved in bacteria.
  
     0.547
amb3515
Hypothetical protein.
  
     0.533
amb4137
Hypothetical protein.
  
     0.500
amb0319
Hypothetical protein.
  
     0.497
amb0021
Hypothetical protein.
  
     0.489
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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