Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb4527Predicted ATPase with chaperone activity. (219 aa)    
Predicted Functional Partners:
amb4507
Predicted ATPase with chaperone activity.
 
     0.976
amb4520
Predicted ATPase with chaperone activity.
 
     0.976
amb0681
Predicted Rossmann fold nucleotide-binding protein; Involved in DNA uptake.
 
 
 0.824
amb2802
Predicted membrane metal-binding protein.
 
  
 0.738
def
N-formylmethionyl-tRNA deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.630
amb4526
Hypothetical protein.
       0.564
amb4528
Hypothetical protein.
       0.535
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
    0.429
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
   
    0.411
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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