STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb4535Zn-dependent protease with chaperone function. (373 aa)    
Predicted Functional Partners:
amb4019
Predicted methyltransferase; TPR repeat.
  
 
 0.823
amb3878
Sensor protein gacS.
  
 
 0.771
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 0.738
amb3911
FOG: TPR repeat.
    
 
 0.703
hslV
ATP-dependent protease HslVU, peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
     
 0.625
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.613
hslU
ATP-dependent protease HslVU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
       0.607
amb0304
Membrane-bound metallopeptidase.
  
 
 0.602
amb1132
Hypothetical protein.
  
 
 0.602
amb1391
Putative Zn-dependent protease; Contains TPR repeats.
  
 
 0.569
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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