Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb4539Predicted transcriptional regulator. (117 aa)    
Predicted Functional Partners:
amb4540
Uncharacterized protein; Conserved in bacteria.
       0.656
amb4246
Transcriptional regulator.
  
 
 
 0.613
amb4541
Hypothetical protein.
       0.553
amb4542
Membrane-bound lytic murein transglycosylase.
       0.551
amb4543
Uncharacterized protein; Conserved in bacteria.
       0.547
amb3502
Chemotaxis protein.
  
     0.505
amb0611
Hypothetical protein CC0952.
  
     0.462
amb1127
Predicted ATPase.
 
     0.453
amb2580
Predicted membrane protein/domain.
  
     0.452
amb2350
CBP3 protein, mitochondrial precursor.
  
     0.436
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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