Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
amb4542Membrane-bound lytic murein transglycosylase. (387 aa)    
Predicted Functional Partners:
amb4543
Uncharacterized protein; Conserved in bacteria.
 
     0.850
amb4540
Uncharacterized protein; Conserved in bacteria.
       0.665
amb4541
Hypothetical protein.
       0.590
amb4539
Predicted transcriptional regulator.
       0.551
secB
Preprotein translocase subunit SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.521
amb1391
Putative Zn-dependent protease; Contains TPR repeats.
  
    0.417
amb0521
Glutamate synthase [NADPH] large chain precursor.
      
 0.412
amb0832
FAD synthase; Belongs to the ribF family.
      
 0.403
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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