Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
hxuBPOTRA domain, ShlB-type family protein. (559 aa)    
Predicted Functional Partners:
DM82_1042
Putative transmembrane protein.
 
 
 0.915
DM82_1043
Putative transmembrane protein.
 
 
 0.901
DM82_6268
Putative transmembrane protein.
 
     0.774
DM82_1053
TPR repeat family protein.
  
   
 0.728
DM82_3644
Hypothetical protein.
  
     0.715
DM82_3546
Gram-negative porin family protein.
  
    0.709
DM82_5127
Autotrans_barl: outer membrane autotransporter barrel domain protein.
 
  
 0.703
DM82_1055
Tad-like Flp pilus-assembly family protein.
  
     0.647
marR_5
marR family protein.
  
     0.637
DM82_1046
tadE-like family protein.
  
     0.624
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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