Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1045Type IV leader peptidase family protein. (90 aa)    
Predicted Functional Partners:
DM82_1046
tadE-like family protein.
       0.867
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.837
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
     
 0.619
dprA
dprA: DNA protecting protein DprA.
  
  
 0.612
DM82_3361
DNA recombination-mediator A family protein.
  
  
 0.612
comEA_1
Helix-hairpin-helix motif family protein.
   
  
 0.570
comEA_2
Helix-hairpin-helix motif family protein.
   
  
 0.570
DM82_1044
flp/Fap pilin component family protein.
       0.500
scpA
scpA/B family protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
   
    0.474
gspF-2
Type II secretion system (T2SS), F family protein.
  
  
 0.473
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.