Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nifAAAA domain family protein. (463 aa)    
Predicted Functional Partners:
DM82_1053
TPR repeat family protein.
 
    0.841
DM82_1054
Hypothetical protein.
       0.837
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.808
rpoN-2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.807
DM82_1055
Tad-like Flp pilus-assembly family protein.
 
     0.801
DM82_1049
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
    0.796
DM82_1051
Type II secretion system (T2SS), F family protein.
 
    0.791
DM82_1052
Type II secretion system (T2SS), F family protein.
 
    0.734
DM82_1050
Type II/IV secretion system family protein.
  
    0.659
DM82_1057
Hypothetical protein.
  
    0.655
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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