Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1064Acetyltransferase family protein. (184 aa)    
Predicted Functional Partners:
ydaF_1
Acetyltransferase family protein.
 
     0.588
DM82_1203
Acetyltransferase family protein.
  
     0.563
DM82_1065
Hypothetical protein.
       0.477
DM82_1066
Sulfate transporter family protein.
 
     0.465
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.462
yycE
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
     0.446
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.435
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.435
DM82_317
Hypothetical protein.
  
     0.402
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.