Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1066Sulfate transporter family protein. (570 aa)    
Predicted Functional Partners:
DM82_1065
Hypothetical protein.
 
     0.747
ppsE_2
AMP-binding enzyme family protein.
   
 
 0.708
pksM
Thioester-redct: thioester reductase domain protein.
    
 
 0.700
petB
Hypothetical protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.696
DM82_973
Calcineurin-like phosphoesterase family protein.
 
   0.591
DM82_1577
Ankyrin repeat family protein.
    
 
 0.561
DM82_837
Caspase domain protein.
    
 
 0.561
nuoM
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
  
 
 0.543
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
  
   0.538
DM82_5142
Membrane bound FAD containing D-sorbitol dehydrogenase family protein.
  
     0.521
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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