STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gfoOxidoreductase, NAD-binding Rossmann fold family protein. (327 aa)    
Predicted Functional Partners:
iolE
Xylose isomerase-like TIM barrel family protein.
 
 
 0.935
iolG
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
  
 
0.915
idhA
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
  
 
0.909
lysS
lysS_bact: lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.746
pdhR_1
Bacterial regulatory s, gntR family protein.
       0.597
ydgJ
Hypothetical protein; Oxidoreductase family, C-terminal alpha/beta domain protein.
  
     0.560
yghZ_1
Aldo/keto reductase family protein.
 
  
 0.537
degA_1
Bacterial regulatory s, lacI family protein.
 
   
 0.487
iolD
Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family.
 
  
 0.469
cutC
cutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
     0.451
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.