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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1137proheadase_HK97: phage prohead protease, HK97 family. (228 aa)    
Predicted Functional Partners:
DM82_1138
major_cap_HK97: phage major capsid protein, HK97 family.
 
  
 0.953
DM82_1136
portal_HK97: phage portal protein, HK97 family.
 
   
 0.943
DM82_1135
Phage Terminase family protein.
 
     0.829
DM82_1134
Hypothetical protein.
       0.807
DM82_1140
Phage head-tail joining family protein.
     
 0.536
DM82_1141
Bacteriophage HK97-gp10, tail-component family protein.
       0.495
DM82_1133
HNH endonuclease family protein.
       0.488
DM82_1146
tape_meas_lam_C: phage tail tape measure protein, lambda family.
 
     0.478
DM82_1139
Phage gp6-like head-tail connector family protein.
       0.408
DM82_1142
Hypothetical protein.
       0.408
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.