Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1147Phage minor tail family protein. (112 aa)    
Predicted Functional Partners:
DM82_1149
phage_tail_L: phage minor tail protein L.
 
 
 0.998
DM82_1150
Hypothetical protein.
 
  
 0.994
DM82_1151
Bacteriophage lambda tail assembly I family protein.
 
   0.993
DM82_1152
Phage tail family protein.
 
   0.991
DM82_4366
Phage T7 tail fiber family protein.
  
   0.932
DM82_761
Hypothetical protein.
  
   0.926
DM82_1146
tape_meas_lam_C: phage tail tape measure protein, lambda family.
 
     0.848
DM82_1140
Phage head-tail joining family protein.
 
     0.842
DM82_1148
Chaperone of endosialidase family protein.
  
  
 0.812
cwlK
D-alanyl-D-alanine carboxypeptidase family protein.
  
    0.788
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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