Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
higAantidote_HigA: addiction module antidote protein, HigA family. (99 aa)    
Predicted Functional Partners:
DM82_1183
Plasmid maintenance system killer family protein.
 
 
 
 0.993
DM82_1185
Putative bacteriophage protein.
 
     0.595
DM82_1186
Hypothetical protein.
 
     0.594
DM82_2258
Helix-turn-helix family protein.
 
   
 0.576
DM82_1184
Putative bacteriophage protein.
       0.530
DM82_2257
Hypothetical protein.
 
   
 0.468
DM82_1132
Plasmid stabilization system family protein.
 
   
 0.464
DM82_3067
Hypothetical protein.
 
     0.433
DM82_1188
Hypothetical protein.
       0.410
DM82_1939
relE_StbE: addiction module toxin, RelE/StbE family protein.
 
   
 0.403
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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