Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1186Hypothetical protein. (220 aa)    
Predicted Functional Partners:
DM82_1185
Putative bacteriophage protein.
 
     0.954
DM82_1181
Putative translation initiation factor IF-2.
 
    0.820
DM82_1180
Hypothetical protein.
 
     0.808
DM82_1184
Putative bacteriophage protein.
       0.807
DM82_1172
Hypothetical protein.
 
     0.803
DM82_1175
Putative mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.
 
   
 0.768
DM82_1150
Hypothetical protein.
 
  
 0.715
DM82_1188
Hypothetical protein.
       0.633
DM82_1149
phage_tail_L: phage minor tail protein L.
 
    0.632
DM82_1183
Plasmid maintenance system killer family protein.
 
     0.608
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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