Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_1207Putative permease family protein. (353 aa)    
Predicted Functional Partners:
yebZ
Copper resistance D family protein.
  
     0.607
ycgR
pilZ domain protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
  
 0.562
nirK
Cu_nitrite_red: nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
  
  
 0.533
mco
Multicopper oxidase family protein.
  
  
 0.522
copA_2
Multicopper oxidase family protein.
  
  
 0.522
DM82_3964
Initiator Replication family protein.
  
     0.519
DM82_5934
Polysaccharide biosynthesis family protein.
  
    0.499
DM82_1377
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.457
DM82_1973
DGC domain protein.
  
  
 0.441
DM82_3793
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.438
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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