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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodINodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. (304 aa)    
Predicted Functional Partners:
yadH_1
nodJ: ABC-2 type transporter, NodJ family protein.
 
 
 0.996
artM_3
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
  
 
0.864
ybhR
ABC-2 type transporter family protein.
 
 
 0.797
ybhS
ABC-2 type transporter family protein.
 
 
 0.783
yadH_2
ABC-2 type transporter family protein.
 
 0.758
irtB_1
ABC transporter family protein.
 
 0.706
yhhJ
Inner membrane transport permease yhhJ.
 
 
 0.685
DM82_3693
ABC-2 type transporter family protein.
  
 
 0.581
ccmA-4
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
 
0.552
DM82_2844
STAS domain protein.
    
  0.541
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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