Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_1211Universal stress family protein. (164 aa)    
Predicted Functional Partners:
DM82_3923
Universal stress family protein.
  
     0.572
DM82_1773
Universal stress family protein.
  
     0.555
yadH_1
nodJ: ABC-2 type transporter, NodJ family protein.
       0.549
nodI
Nodulation ABC transporter NodI; Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4- linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system.
       0.549
DM82_6224
Universal stress family protein.
  
     0.548
DM82_5312
Universal stress family protein.
  
     0.539
DM82_5006
Universal stress family protein.
  
     0.507
DM82_3766
Transglutaminase-like superfamily protein.
  
     0.502
DM82_5008
Universal stress family protein.
  
     0.477
DM82_6103
O-antigen ligase like membrane family protein.
  
     0.463
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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