STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_123Hypothetical protein. (275 aa)    
Predicted Functional Partners:
DM82_3128
ATP synthase I chain family protein.
  
     0.707
DM82_2305
Hypothetical protein.
  
     0.702
DM82_1657
Tetratricopeptide repeat family protein.
  
     0.687
DM82_176
O-Antigen ligase family protein.
  
     0.683
DM82_183
snoaL-like domain protein.
  
     0.674
ascD
2Fe-2S iron-sulfur cluster binding domain protein.
  
 
 0.656
pyrK
Oxidoreductase FAD-binding domain protein.
   
 
 0.644
DM82_124
Putative vanillate decarboxylase VdcD protein.
       0.631
DM82_1089
Putative membrane protein.
  
     0.620
DM82_617
Putative lipoprotein transmembrane.
  
     0.618
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.