Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nlpD_1Peptidase M23 family protein. (457 aa)    
Predicted Functional Partners:
nlpD_6
lysM domain protein.
 
   
 0.826
lepB
sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.764
lepB-2
sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.
  
  
 0.732
mrcA_5
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.705
mrcA_2
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.567
mrcA
mrcA, penicillin-binding 1 (Peptidoglycan synthetase) transmembrane protein.
  
   
 0.566
mrcA_1
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.560
mrcA_4
Penicillin binding transpeptidase domain protein.
  
   
 0.556
nlpD_5
lysM domain protein.
 
   
0.522
secF
Export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.516
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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