Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fimAType-1 fimbrial protein, A chain. (170 aa)    
Predicted Functional Partners:
papC
papC N-terminal domain protein.
 
 
 0.972
papD_1
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
 
 
 0.958
fimC
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
 
 
 0.932
fimD_2
papC N-terminal domain protein.
 
 
 0.925
fimA_2
Fimbrial family protein.
 
   
 0.821
DM82_883
Hypothetical protein.
  
     0.755
DM82_2571
parB-like nuclease family protein.
  
     0.735
DM82_1626
Major Facilitator Superfamily protein.
  
     0.723
DM82_6201
BNR repeat-like domain protein.
  
     0.718
DM82_1624
Sigma-70, region 4 family protein.
  
  
 0.699
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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