STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
papD_1Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein. (249 aa)    
Predicted Functional Partners:
fimA_2
Fimbrial family protein.
 
 
 0.989
papC
papC N-terminal domain protein.
 
 
 0.979
fimA
Type-1 fimbrial protein, A chain.
 
 
 0.958
fimD_2
papC N-terminal domain protein.
 
 
 0.932
fimA_3
Fimbrial family protein.
 
 
 0.929
DM82_1245
Fimbrial family protein.
  
 
 0.898
fimD_1
Outer membrane usher family protein.
 
 
 0.743
DM82_5771
Hypothetical protein.
  
     0.685
fimD_3
Outer membrane usher family protein.
 
 
 0.663
DM82_2391
snoaL-like domain protein.
  
     0.620
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.