Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_1258sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein. (215 aa)    
Predicted Functional Partners:
DM82_5176
fecR family protein.
 
 
 0.850
DM82_2055
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
 
 
 0.845
fhuF
fe_III_red_FhuF: siderophore-iron reductase FhuF.
 
  
 0.769
mbtH_1
mbtH-like family protein.
 
  
 0.672
DM82_1275
Formyl transferase family protein.
  
   
 0.661
yhfQ
Periplasmic binding family protein.
 
  
 0.647
DM82_6104
Glycosyl transferases group 1 family protein.
  
     0.645
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
  
 0.623
DM82_1260
Taurine catabolism dioxygenase TauD, TfdA family protein.
 
     0.610
yojI
Cyc_pep_trnsptr: cyclic peptide transporter family protein.
  
   
 0.602
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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