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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1258sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein. (215 aa)    
Predicted Functional Partners:
DM82_2055
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
 
 0.861
DM82_5176
fecR family protein.
 
 
 0.847
fhuF
fe_III_red_FhuF: siderophore-iron reductase FhuF.
 
    0.751
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.677
DM82_5951
Putative transmembrane protein.
 
 
   0.672
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.667
mbtH_1
mbtH-like family protein.
 
    0.664
DM82_1275
Formyl transferase family protein.
  
   
 0.664
yhfQ
Periplasmic binding family protein.
 
  
 0.645
DM82_6104
Glycosyl transferases group 1 family protein.
  
     0.645
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.