close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobWcobW: cobalamin biosynthesis protein CobW. (355 aa)    
Predicted Functional Partners:
cobN
cobalto_cobN: cobaltochelatase, CobN subunit.
 
  
 0.949
rpsN
Ribosomal S14p/S29e family protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.744
cbiT
cbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit.
 
   
 0.726
cobJ
cobJ_cbiH: precorrin-3B C17-methyltransferase.
 
   
 0.699
DM82_1283
Hypothetical protein.
       0.693
cobK
Precorrin-6x reductase CbiJ/CobK family protein.
 
   
 0.688
cobH
precorrin-8X methylmutase family protein.
 
   
 0.675
psaA
Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.654
folE2
GTP cyclohydrolase folE2; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.651
hoxN
High-affinity nickel transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
     
 0.647
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.