Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dgoDHypothetical protein; Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein. (382 aa)    
Predicted Functional Partners:
DM82_2634
2-keto-3-deoxy-galactonokinase family protein.
 
 
 0.969
dgoA
Thiamine monophosphate synthase/TENI family protein.
 
   
 0.773
panE_1
apbA_panE: 2-dehydropantoate 2-reductase family protein.
   
    0.469
panE_2
2-dehydropantoate 2-reductase family protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.469
DM82_274
2-dehydropantoate 2-reductase family protein; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
   
    0.469
ymdB
Macro domain protein.
   
   0.462
gnl_1
SMP-30/Gluconolaconase/LRE-like region family protein.
 
   
 0.427
gudD-2
Glucar-dehydr: glucarate dehydratase.
  
   
 0.426
gudD
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
   
 0.424
garD_2
Hypothetical protein; D-galactarate dehydratase / Altronate hydrolase, C terminus family protein.
 
   
 0.414
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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