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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiAPutative bifunctional chitinase/lysozyme. (453 aa)    
Predicted Functional Partners:
chb
Chitobiase.
  
  
 0.955
DM82_365
Glycosyl hydrolase family 20, catalytic domain protein.
  
  
 0.936
nagZ
Hypothetical protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
     
 0.908
DM82_926
Hypothetical protein; Glycosyl hydrolase family 3 C-terminal domain protein; Belongs to the glycosyl hydrolase 3 family.
     
 0.908
DM82_85
Phosphotransferase enzyme family protein.
     
  0.900
DM82_4667
Peptidase propeptide and YPEB domain protein.
 
  
 0.711
DM82_3314
Toprim domain protein.
  
     0.692
DM82_13
PAS fold family protein.
  
     0.639
gbpA
Chitin binding domain protein.
 
  
 0.622
DM82_883
Hypothetical protein.
  
     0.621
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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