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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1308marR family protein. (179 aa)    
Predicted Functional Partners:
marR_3
marR family protein.
  
     0.766
hppD
4HPPD: 4-hydroxyphenylpyruvate dioxygenase.
 
    0.610
mhpA_1
FAD binding domain protein.
  
  
 0.543
maiA
maiA: maleylacetoacetate isomerase.
  
     0.531
mhpA_2
FAD binding domain protein.
  
  
 0.511
DM82_3603
Fumarylacetoacetate (FAA) hydrolase family protein.
  
     0.506
braC_1
Receptor ligand binding region family protein.
       0.434
blaB1
Metallo-beta-lactamase superfamily protein.
  
     0.411
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
   
 0.406
phhA
Phe4hydrox_mono: phenylalanine-4-hydroxylase.
  
     0.406
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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