Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
polS_2Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
DM82_1311
Hypothetical protein.
       0.774
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.737
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
 
 0.737
fabG3_2
Short chain dehydrogenase family protein.
  
 
   0.728
budC_3
Short chain dehydrogenase family protein.
  
 
   0.701
budC_4
Short-chain dehydrogenase/reductase SDR.
  
 
   0.697
DM82_5617
Short chain dehydrogenase family protein.
  
 
   0.686
fabG_3
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.671
fabG_12
Short chain dehydrogenase family protein.
  
 
   0.652
fabG_1
Short chain dehydrogenase family protein.
  
 
   0.646
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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