Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yehYBinding--dependent transport system inner membrane component family protein. (406 aa)    
Predicted Functional Partners:
proV_1
ABC transporter family protein.
 
 0.999
opuBC
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
 0.999
yehW
Binding--dependent transport system inner membrane component family protein.
 
 
 
0.993
proV
proV: glycine betaine/L-proline transport ATP binding subunit.
 
  
 0.682
bioC_1
Methyltransferase domain protein.
 
     0.466
choX
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
 
  
 0.455
choX-2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein.
 
  
 0.451
opuAC_1
Substrate binding domain of ABC-type glycine betaine transport system family protein.
 
  
 0.427
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
 
  
0.406
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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