Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
accD5propionyl-CoA carboxylase, beta subunit. (502 aa)    
Predicted Functional Partners:
accA1_1
D-ala D-ala ligase family protein.
 
 0.957
cfiA
Biotin-requiring enzyme family protein.
 
 0.936
accC-2
acetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.844
accA1_2
D-ala D-ala ligase family protein.
  
 0.813
accA1_3
D-ala D-ala ligase family protein.
  
 0.813
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.761
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
 
 0.761
mvaA
Hydroxymethylglutaryl-coenzyme A reductase family protein.
       0.753
DM82_1351
mmgE/PrpD family protein.
  
    0.684
yngG
HMGL-like family protein.
 
 
 0.671
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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