Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dosPEAL domain protein. (264 aa)    
Predicted Functional Partners:
pleD_2
Diguanylate cyclase.
 
 0.981
pleD_1
GGDEF: diguanylate cyclase domain protein.
 
 0.905
cph2_1
GGDEF: diguanylate cyclase domain protein.
 
 
0.881
cph2_2
GGDEF: diguanylate cyclase domain protein.
 
 
0.866
cph2_7
GGDEF: diguanylate cyclase domain protein.
 
 
0.866
cph2_5
GGDEF: diguanylate cyclase domain protein.
 
 0.849
yjcC_3
EAL domain protein.
 
  
 0.826
yjcC_1
EAL domain protein.
 
  
 0.816
cph2_4
GGDEF: diguanylate cyclase domain protein.
   
 0.809
cph2_6
GGDEF: diguanylate cyclase domain protein.
 
   
 0.806
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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