Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fimD_2papC N-terminal domain protein. (833 aa)    
Predicted Functional Partners:
fimA_2
Fimbrial family protein.
 
 
 0.992
fimC
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
 
 
 0.990
papD_1
Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein.
 
 
 0.976
fimA_3
Fimbrial family protein.
 
 
 0.969
fimA
Type-1 fimbrial protein, A chain.
 
 
 0.925
DM82_913
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
 
 
 0.858
papD_2
Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein.
 
 
 0.827
DM82_5127
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
    0.563
DM82_5163
Hypothetical protein.
   
    0.532
DM82_1245
Fimbrial family protein.
  
 
 0.513
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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