STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1398LTXXQ motif family protein. (171 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.956
DM82_3766
Transglutaminase-like superfamily protein.
  
     0.719
DM82_3964
Initiator Replication family protein.
  
     0.713
DM82_5934
Polysaccharide biosynthesis family protein.
  
     0.710
yebZ
Copper resistance D family protein.
  
     0.707
DM82_680
HDOD domain protein.
  
    0.671
DM82_1377
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.646
DM82_3793
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.631
DM82_204
Carbon monoxide dehydrogenase subunit G family protein.
  
     0.624
DM82_535
META domain protein.
  
     0.624
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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