STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choCholesterol oxidase. (586 aa)    
Predicted Functional Partners:
DM82_4850
Hypothetical protein.
  
    0.633
pyk
Pyruv_kin: pyruvate kinase; Belongs to the pyruvate kinase family.
   
 
 0.534
DM82_138
Sulfite exporter TauE/SafE family protein.
       0.497
DM82_137
Membrane transport family protein.
       0.495
DM82_4207
Methyltransferase domain protein.
  
     0.493
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
 
 0.459
DM82_553
PRC-barrel domain protein.
  
     0.451
DM82_5103
Hypothetical protein; uvrD-like helicase C-terminal domain protein.
  
   
 0.448
gltB_2
Glutamine amidotransferases class-II family protein.
     
 0.444
DM82_4075
Hypothetical protein.
  
     0.442
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.