Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_1450Recombinase family protein. (411 aa)    
Predicted Functional Partners:
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
     
 0.663
DM82_3331
Phage P2 GpU family protein.
  
    0.582
ydjH_2
pfkB carbohydrate kinase family protein.
       0.569
DM82_3358
ATPase subunit of terminase family protein.
  
    0.522
DM82_3334
Mu-like prophage FluMu gp41 family protein.
  
    0.513
DM82_3357
Phage capsid scaffolding (GPO) serine peptidase family protein.
  
    0.508
DM82_3045
Phage head completion family protein.
  
    0.504
DM82_3359
portal_PBSX: phage portal protein, PBSX family.
  
    0.502
DM82_3044
portal_PBSX: phage portal protein, PBSX family.
  
    0.500
DM82_3052
P2 phage tail completion R family protein.
  
    0.500
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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