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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1498endonuclease/Exonuclease/phosphatase family protein. (286 aa)    
Predicted Functional Partners:
sufS
Cysteine desulfurase, SufS family protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
   
   0.683
sufS-2
sufS: cysteine desulfurase, SufS family protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
   
   0.683
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
     
 0.631
DM82_3296
Patatin-like phospholipase family protein.
 
     0.556
DM82_204
Carbon monoxide dehydrogenase subunit G family protein.
  
     0.508
DM82_2010
hpnL: membrane family protein.
 
  
 0.499
DM82_3766
Transglutaminase-like superfamily protein.
  
     0.473
epsM
Type II secretion system (T2SS), M family protein.
  
     0.467
DM82_4231
Hypothetical protein.
  
  
 0.446
DM82_428
Hypothetical protein.
  
     0.437
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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