Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nlpD_2lysM domain protein. (291 aa)    
Predicted Functional Partners:
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
  
  
 0.852
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.848
pcm
protein-L-isoaspartate O-methyltransferase; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins.
     
 0.834
DM82_1499
DNA polymerase family B, exonuclease domain protein.
       0.798
mrcA_2
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.587
lepB-2
sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.585
frc_3
coA-transferase III family protein; Belongs to the CoA-transferase III family.
       0.575
mrcA
mrcA, penicillin-binding 1 (Peptidoglycan synthetase) transmembrane protein.
  
   
 0.575
mrcA_1
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.571
mrcA_5
PBP_1a_fam: penicillin-binding, 1A family protein.
  
   
 0.566
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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