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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrB_2Major Facilitator Superfamily protein. (520 aa)    
Predicted Functional Partners:
mta
merR regulatory family protein.
 
     0.847
DM82_4645
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.823
DM82_5535
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 0.823
yibH_1
hlyD secretion family protein.
 
 0.822
DM82_4641
Major Facilitator Superfamily protein.
  
     0.763
hsrA_6
Major Facilitator Superfamily protein.
  
     0.731
mtfA
Glucose-regulated metallo-peptidase M90 family protein; Belongs to the MtfA family.
       0.683
hsrA_4
Major Facilitator Superfamily protein.
  
     0.674
stp_2
Sugar (and other) transporter family protein.
  
     0.636
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
       0.519
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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