Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DM82_1537Hypothetical protein. (124 aa)    
Predicted Functional Partners:
DM82_526
Hypothetical protein.
  
     0.649
DM82_185
Zinc-finger domain protein.
  
     0.616
DM82_1882
Hypothetical protein.
 
     0.610
DM82_3537
S-adenosyl-L-methionine-dependent methyltransferase family protein.
  
     0.598
arnT
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
       0.577
bcp_1
Redoxin family protein.
  
    0.567
bioC_3
ubiE/COQ5 methyltransferase family protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
  
     0.563
thrC
thrC: threonine synthase.
       0.558
hom
Homoserine dehydrogenase.
       0.558
DM82_1539
Small Multidrug Resistance family protein.
       0.548
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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