Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
arnB_2Beta-eliminating lyase family protein; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)    
Predicted Functional Partners:
arnC
Glycosyl transferase 2 family protein.
 
  
 0.944
arnA_2
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.931
arnA_1
Formyl transferase family protein.
 
  
 0.911
arnD
Polysaccharide deacetylase family protein.
 
  
 0.886
wcaJ_2
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.878
wcaJ_3
wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.878
capD
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
  
 0.861
algD
NDP-sugDHase: nucleotide sugar dehydrogenase family protein; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.846
DM82_1539
Small Multidrug Resistance family protein.
 
  
 0.816
arnT
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
 
  
 0.787
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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