Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
puuB_1FAD binding domain protein. (431 aa)    
Predicted Functional Partners:
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
 
 
 0.850
yecS_4
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
 
     0.803
artP
Amino acid ABC transporter.
       0.774
artI
Bacterial extracellular solute-binding s, 3 family protein.
 
     0.738
puuA_1
Glutamine synthetase, catalytic domain protein.
 
  
 0.707
puuA_2
Glutamine synthetase, catalytic domain protein.
 
  
 0.707
puuD_1
Peptidase C26 family protein.
 
  
 0.645
puuD_2
Peptidase C26 family protein.
 
  
 0.645
tpa_3
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.499
DM82_1950
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.495
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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