STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcB_2His Kinase A domain protein. (602 aa)    
Predicted Functional Partners:
evgS
Response regulator.
 
 
0.985
zraS_3
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
0.978
arcB_4
Sensory box protein.
 
 
0.954
rcsC_1
Response regulator.
 
 
0.954
DM82_159
Response regulator.
 
   0.932
rpfC_1
Response regulator.
 
 
0.890
rcsC_3
HAMP domain protein.
 
 
0.889
DM82_5804
Hypothetical protein.
  
 
 0.889
DM82_158
Oxidoreductase molybdopterin binding domain protein.
 
     0.882
DM82_3972
Response regulator.
 
 
0.881
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.