Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
psiFpsiF repeat family protein. (96 aa)    
Predicted Functional Partners:
ygaU
BON domain protein.
  
    0.788
DM82_1440
asmA family protein.
  
    0.641
DM82_1571
Putative transmembrane protein.
       0.496
ytfF
eamA-like transporter family protein.
  
     0.494
bfr
Bacterioferritin; Iron-storage protein.
  
    0.493
DM82_2217
YXWGXW repeat family protein.
  
     0.492
DM82_3621
vanZ like family protein.
  
     0.492
DM82_494
Hypothetical protein.
  
    0.484
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.479
DM82_6163
cheW-like domain protein.
  
     0.467
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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