Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hpnDhpnD: squalene synthase HpnD. (278 aa)    
Predicted Functional Partners:
ispA_1
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.901
ispA_2
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.901
ispB
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family.
  
 0.900
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.829
gap
GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.780
hpnD-2
hpnD: squalene synthase HpnD.
  
     0.752
crtP
FAD dependent oxidoreductase family protein.
 
  
 0.721
bchI
AAA domain family protein.
 
  
 0.611
DM82_526
Hypothetical protein.
  
     0.552
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.531
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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