Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1661Hypothetical protein. (69 aa)    
Predicted Functional Partners:
DM82_4091
Hypothetical protein.
   
    0.761
garR_2
NAD binding domain of 6-phosphogluconate dehydrogenase family protein.
  
    0.597
DM82_6123
Hypothetical protein.
  
    0.592
DM82_1572
Hypothetical protein.
  
    0.591
DM82_1440
asmA family protein.
  
    0.575
DM82_4092
Hypothetical protein.
   
  
 0.569
DM82_2417
Hypothetical protein.
  
    0.567
bfr
Bacterioferritin; Iron-storage protein.
  
    0.464
DM82_1227
Hypothetical protein; Belongs to the UPF0229 family.
  
    0.439
DM82_1226
Hypothetical protein; prkA serine kinase C-terminal domain protein.
  
    0.408
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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