Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
atzBAmidohydrolase family protein. (470 aa)    
Predicted Functional Partners:
uraH
Hdxy_isourate: hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.642
xdhB
xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit.
 
  
 0.593
xdhC
xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC.
 
  
 0.558
uraD
UHCUDC: OHCU decarboxylase.
 
     0.495
xdhA
xanthine_xdhA: xanthine dehydrogenase, small subunit.
 
     0.492
ygfU
Putative purine permease ygfU.
 
  
 0.459
pbuX
pbuX: xanthine permease family protein.
 
  
 0.441
rpfC_2
Response regulator.
  
  
 0.404
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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